Function reference
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run_exponential_model()
- Run exponential growth model
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run_logistic_model()
- Run logistic growth model
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plot_continuous_population_growth()
- Plot the dynamics of a discrete population growth model
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run_discrete_exponential_model()
- Discrete exponential growth model
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run_discrete_logistic_model()
- Discrete logistic model
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run_beverton_holt_model()
- Beverton Holt model
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run_ricker_model()
- Ricker model of discrete population growth with a carrying capacity
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plot_discrete_population_cobweb()
- Plot a cobweb digram of a discrete population growth model
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plot_discrete_population_growth()
- Plot the dynamics of a discrete population growth model
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run_structured_population_simulation()
- Simulate growth of a (st)age-structured population
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plot_structured_population_agedist()
- Generate a trajectory of the proportion of individuals in each (st)age over time
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plot_structured_population_lambda()
- Generate a trajectory of the total population size over time
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plot_structured_population_size()
- Generate a trajectory of population size in each (st)age over time
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plot_leslie_diagram()
- Generate diagram of population structure
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run_source_sink()
- Simulate dynamics of the source and sink populations under Pulliam (1988)'s model
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plot_source_sink()
- plot population trajectories of Pulliams' source sink meta-population
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run_lvcomp_model()
- Run the Lotka-Volterra competition model
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plot_lvcomp_portrait()
- Generate a phase portrait (N1 vs N2) plot for the Lotka-Volterra model
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plot_lvcomp_time()
- Generate a trajectory of population size (N1 vs N2) over time for the Lotka-Volterra model
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run_abiotic_comp_model()
- Run the Tilman abiotic resource competition model
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run_abiotic_comp_rstar()
- Calculate RStar for the 2-consumer, 2-essential resource competition
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plot_abiotic_comp_portrait()
- Plot the phase portrait of resources in the abiotic resource competition model
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plot_abiotic_comp_time()
- Plot population size over time for the aboitic resource competition model
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run_biotic_comp_model()
- Run a model of competition for a biotic resource
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plot_biotic_comp_time()
- Plot population size over time for the boitic resource competition model
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plot_functional_responses()
- Plot population size over time for the biotic resource competition model
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run_predprey_model()
- Run predator-prey model
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plot_predprey_portrait()
- Function for plotting phase portrait of predator-prey model
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plot_predprey_time()
- Function for plotting phase portrait of predator-prey model
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plot_functional_responses()
- Plot population size over time for the biotic resource competition model
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run_infectiousdisease_model()
- Run infectious disease models models
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plot_infectiousdisease_portrait()
- Plot phase portrait for infectious disease model model
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plot_infectiousdisease_time()
- Plot phase portrait for infectious disease model model
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run_mutualism()
- Run model of mutualism with saturating functional response
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plot_mutualism_portrait()
- Plot phase portrait for mutualism model
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plot_mutualism_time()
- Plot population trajectories over time for mutualism model
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run_ibiogeo_model()
- Runs the island biogeography model.
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run_smith_fretwell_model()
- Make a Smith-Fretwell plot to show the optimal seed size
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run_smith_fretwell_model_sp2()
- Add a new Smith-Fretwell curve to a ggplot object created with run_smith_fretwell_model
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shiny_singlepop_continuous()
shiny_population_growth_discrete()
shiny_lvcomp()
shiny_predprey()
shiny_biotic_comp()
shiny_infectious_disease()
shiny_source_sink()
shiny_structured_population()
shiny_ibiogeo_model()
shiny_abiotic_comp()
shiny_smith_fretwell()
shiny_mutualism()
- Run the shiny apps for various models
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theme_apps()
- standard ggplot2 theme to use throughout the package