Function reference
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run_exponential_model() - Run exponential growth model
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run_logistic_model() - Run logistic growth model
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plot_continuous_population_growth() - Plot the dynamics of a discrete population growth model
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run_discrete_exponential_model() - Discrete exponential growth model
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run_discrete_logistic_model() - Discrete logistic model
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run_beverton_holt_model() - Beverton Holt model
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run_ricker_model() - Ricker model of discrete population growth with a carrying capacity
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plot_discrete_population_cobweb() - Plot a cobweb digram of a discrete population growth model
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plot_discrete_population_growth() - Plot the dynamics of a discrete population growth model
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run_structured_population_simulation() - Simulate growth of a (st)age-structured population
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plot_structured_population_agedist() - Generate a trajectory of the proportion of individuals in each (st)age over time
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plot_structured_population_lambda() - Generate a trajectory of the total population size over time
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plot_structured_population_size() - Generate a trajectory of population size in each (st)age over time
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plot_leslie_diagram() - Generate diagram of population structure
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run_source_sink() - Simulate dynamics of the source and sink populations under Pulliam (1988)'s model
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plot_source_sink() - plot population trajectories of Pulliams' source sink meta-population
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run_lvcomp_model() - Run the Lotka-Volterra competition model
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plot_lvcomp_portrait() - Generate a phase portrait (N1 vs N2) plot for the Lotka-Volterra model
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plot_lvcomp_time() - Generate a trajectory of population size (N1 vs N2) over time for the Lotka-Volterra model
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run_abiotic_comp_model() - Run the Tilman abiotic resource competition model
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run_abiotic_comp_rstar() - Calculate RStar for the 2-consumer, 2-essential resource competition
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plot_abiotic_comp_portrait() - Plot the phase portrait of resources in the abiotic resource competition model
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plot_abiotic_comp_time() - Plot population size over time for the aboitic resource competition model
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run_biotic_comp_model() - Run a model of competition for a biotic resource
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plot_biotic_comp_time() - Plot population size over time for the boitic resource competition model
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plot_functional_responses() - Plot population size over time for the biotic resource competition model
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run_predprey_model() - Run predator-prey model
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plot_predprey_portrait() - Function for plotting phase portrait of predator-prey model
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plot_predprey_time() - Function for plotting phase portrait of predator-prey model
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plot_functional_responses() - Plot population size over time for the biotic resource competition model
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run_infectiousdisease_model() - Run infectious disease models models
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plot_infectiousdisease_portrait() - Plot phase portrait for infectious disease model model
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plot_infectiousdisease_time() - Plot phase portrait for infectious disease model model
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run_mutualism() - Run model of mutualism with saturating functional response
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plot_mutualism_portrait() - Plot phase portrait for mutualism model
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plot_mutualism_time() - Plot population trajectories over time for mutualism model
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run_ibiogeo_model() - Runs the island biogeography model.
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run_smith_fretwell_model() - Make a Smith-Fretwell plot to show the optimal seed size
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run_smith_fretwell_model_sp2() - Add a new Smith-Fretwell curve to a ggplot object created with run_smith_fretwell_model
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shiny_singlepop_continuous()shiny_population_growth_discrete()shiny_lvcomp()shiny_predprey()shiny_biotic_comp()shiny_infectious_disease()shiny_source_sink()shiny_structured_population()shiny_ibiogeo_model()shiny_abiotic_comp()shiny_smith_fretwell()shiny_mutualism() - Run the shiny apps for various models
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theme_apps() - standard ggplot2 theme to use throughout the package