Function reference

run_exponential_model()
 Run exponential growth model

run_logistic_model()
 Run logistic growth model

plot_continuous_population_growth()
 Plot the dynamics of a discrete population growth model

run_discrete_exponential_model()
 Discrete exponential growth model

run_discrete_logistic_model()
 Discrete logistic model

run_beverton_holt_model()
 Beverton Holt model

run_ricker_model()
 Ricker model of discrete population growth with a carrying capacity

plot_discrete_population_cobweb()
 Plot a cobweb digram of a discrete population growth model

plot_discrete_population_growth()
 Plot the dynamics of a discrete population growth model

run_structured_population_simulation()
 Simulate growth of a (st)agestructured population

plot_structured_population_agedist()
 Generate a trajectory of the proportion of individuals in each (st)age over time

plot_structured_population_lambda()
 Generate a trajectory of the total population size over time

plot_structured_population_size()
 Generate a trajectory of population size in each (st)age over time

plot_leslie_diagram()
 Generate diagram of population structure

run_source_sink()
 Simulate dynamics of the source and sink populations under Pulliam (1988)'s model

plot_source_sink()
 plot population trajectories of Pulliams' source sink metapopulation

run_lvcomp_model()
 Run the LotkaVolterra competition model

plot_lvcomp_portrait()
 Generate a phase portrait (N1 vs N2) plot for the LotkaVolterra model

plot_lvcomp_time()
 Generate a trajectory of population size (N1 vs N2) over time for the LotkaVolterra model

run_abiotic_comp_model()
 Run the Tilman abiotic resource competition model

run_abiotic_comp_rstar()
 Calculate RStar for the 2consumer, 2essential resource competition

plot_abiotic_comp_portrait()
 Plot the phase portrait of resources in the abiotic resource competition model

plot_abiotic_comp_time()
 Plot population size over time for the aboitic resource competition model

run_biotic_comp_model()
 Run a model of competition for a biotic resource

plot_biotic_comp_time()
 Plot population size over time for the boitic resource competition model

plot_functional_responses()
 Plot population size over time for the biotic resource competition model

run_predprey_model()
 Run predatorprey model

plot_predprey_portrait()
 Function for plotting phase portrait of predatorprey model

plot_predprey_time()
 Function for plotting phase portrait of predatorprey model

plot_functional_responses()
 Plot population size over time for the biotic resource competition model

run_infectiousdisease_model()
 Run infectious disease models models

plot_infectiousdisease_portrait()
 Plot phase portrait for infectious disease model model

plot_infectiousdisease_time()
 Plot phase portrait for infectious disease model model

run_mutualism()
 Run model of mutualism with saturating functional response

plot_mutualism_portrait()
 Plot phase portrait for mutualism model

plot_mutualism_time()
 Plot population trajectories over time for mutualism model

run_ibiogeo_model()
 Runs the island biogeography model.

run_smith_fretwell_model()
 Make a SmithFretwell plot to show the optimal seed size

run_smith_fretwell_model_sp2()
 Add a new SmithFretwell curve to a ggplot object created with run_smith_fretwell_model

shiny_singlepop_continuous()
shiny_population_growth_discrete()
shiny_lvcomp()
shiny_predprey()
shiny_biotic_comp()
shiny_infectious_disease()
shiny_source_sink()
shiny_structured_population()
shiny_ibiogeo_model()
shiny_abiotic_comp()
shiny_smith_fretwell()
shiny_mutualism()
 Run the shiny apps for various models

theme_apps()
 standard ggplot2 theme to use throughout the package