Plot phase portrait for infectious disease model model

Plot phase portrait for infectious disease model model

Usage

plot_infectiousdisease_time(sim_df, model_type)

Arguments

sim_df

simulated data frame generated from run_infectiousdisease_model()

model_type

which type of model to run? (should be one of SIR, SIR_ft, SEIR, SEIR_ft, SIRD, SIRD_ft, SIS, or SIS_ft)

See also

run_infectiousdisease_model() to simulate the dynamics of the model, and plot_infectiousdisease_portrait() to plot pairwise portrait diagrams

Examples

# Run SIR model
params_vec <- c(m = .1, beta = .01, v = .2, gamma = 0)
init_vec <- c(S = 100, I = 1, R = 0)
time_vec <- seq(0, 100, 0.1)
sir_out <- run_infectiousdisease_model(time = time_vec, init = init_vec,
params = params_vec, model_type = "SIR")
plot_infectiousdisease_time(sir_out, model_type = "SIR")